Plot community profiles — plot_smooth

Plot the smooth community profiles based on a resampled statistic

plot_smooth_profile(
  tstat,
  net_name = "",
  trunc_type = "none",
  spar = 0.3,
  plot_null_spar = T,
  alpha = 0.3,
  base_font_size = 12
)

Arguments

tstat: dataframe that has a column 'value' as statistic in the plot and a column 'K' as its corresponding community number
net_name: name of network
trunc_type: method to round the dip/elbow point as the estimated community number
spar: the sparsity level of fitting spline to the value of tstat
plot_null_spar: whether to plot the spline with zero sparsity
alpha: transparency of the points in the plot
base_font_size: font size of the plot

smooth profile plot of a network